Clinical text mining – Ixa Group. Language Technology. https://www.ehu.eus/ehusfera/ixa News from the Ixa Group in the University of the Basque Country Fri, 28 Jun 2019 20:01:16 +0000 en-US hourly 1 https://wordpress.org/?v=5.6.4 One of the best three papers on Clinical NLP in 2017 was published by Ixa Group https://www.ehu.eus/ehusfera/ixa/2019/06/28/one-of-the-best-three-papers-on-clinical-nlp-in-2017-was-published-by-ixa-group/ https://www.ehu.eus/ehusfera/ixa/2019/06/28/one-of-the-best-three-papers-on-clinical-nlp-in-2017-was-published-by-ixa-group/#respond Fri, 28 Jun 2019 19:51:40 +0000 http://www.ehu.eus/ehusfera/ixa/?p=2676 A paper written by IXA members Arantza Casillas, Koldo Gojenola, Maite Oronoz and Alicia Perez, among the 3 best papers published in 2017 in the field of clinical Natural Language Processing.

The paper entitled “Semi-supervised medical entity recognition: A study on Spanish and Swedish clinical corpora“, by Pérez A, Weegar R, Casillas A, Gojenola K, [...]]]> A paper written by IXA members Arantza Casillas, Koldo Gojenola, Maite Oronoz and Alicia Perez, among the 3 best papers published in 2017 in the field of clinical Natural Language Processing.

The paper entitled “Semi-supervised medical entity recognition: A study on Spanish and Swedish clinical corpora“, by Pérez A, Weegar R, Casillas A, Gojenola K, Oronoz M, Dalianis H., published in the Journal of Biomedical Informatics , was considered one of the best three papers in the field of clinical Natural Language Processing in 2017.

A survey of the literature was performed in bibliographic databases. PubMed and Association of Computational Linguistics (ACL) Anthology were searched for papers with a focus on NLP efforts applied to clinical texts or aimed at a clinical outcome. A total of 709 papers were automatically ranked and then manually reviewed. A shortlist of 15 candidate best papers was selected by the section editors and peer-reviewed by independent external reviewers to come to the three best clinical NLP papers for 2017.

The paper addresses “medical named entity recognition in clinical text in Spanish and Swedish; furthermore, they emphasize methods’ contribution in a context where little training data is available, which is often the case for languages other than English or when a new medical specialty is explored”.

The selection process is described and published in “Expanding the Diversity of Texts and Applications: Findings from the Section on Clinical Natural Language Processing of the International Medical Informatics Association Yearbook“, by Aurélie Névéol, Pierre Zweigenbaum, in the Yearbook of Medical Informatics,

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Talk: Clinical text mining (H. Dalianis, 2016-04-06) https://www.ehu.eus/ehusfera/ixa/2016/04/06/talk-clinical-text-mining-h-dalianis-2016-04-06/ https://www.ehu.eus/ehusfera/ixa/2016/04/06/talk-clinical-text-mining-h-dalianis-2016-04-06/#comments Wed, 06 Apr 2016 12:05:06 +0000 http://www.ehu.eus/ehusfera/ixa/?p=2306 Healthcare has many challenges in form of monitoring and predicting adverse events as healthcare associated infections or [...]]]>
Talk: Clinical text mining at Stockholm University and at other research groups in Europe.
When: Wed, 6 April, 3pm – 4pm
oom 3.2 gelan   map
Abstract:

Healthcare has many challenges in form of monitoring and predicting adverse events as healthcare associated infections or adverse drug events. When and how many have occurred, how can one predict them? This talk will describe the research carried out at the Clinical text mining group at DSV/Stockholm University and the future research that will be carried out. Topics are detection of symptoms, diseases, body parts and drugs from Swedish electronic patient records, including deciding on the certainty of a symptom or disease and detecting adverse (drug) events. Current and future research are detecting early symptoms of cancer and de-identification of electronic patient records for secondary use. An overview of other researchers and groups in Scandinavia and Europe will be presented.

Curriculum Vitae:

Hercules Dalianis, born 20 July 1959, Dalianis is a professor in Computer and Systems Sciences at Stockholm University. Dalianis graduated in 1984 at KTH in Electrotechnical Engineering, (Civilingenjör), and received his PhD/Teknologie doctor) at KTH 1996. Dalianis was post doc researcher at University of Southern California/ISI in Los Angeles 1997-98. Dalianis was also post doc researcher (forskarassistent) at NADA KTH 1999-2003, moreover Dalianis held a three year guest professorship at CST, University of Copenhagen during 2002-2005, founded by Norfa, the Nordic council. Dalianis founded Euroling AB in year 2000. Euroling AB develops and delivers the web and intranet search engine SiteSeeker to over 350 customers, mostly Swedish governmental organisations. Dalianis works in the interface between industry and university and with the aim to make research results useful for society. Dalianis has specialized in the area of human language technology, to make computer to understand and process human language text, but also to make a computer to produce text automatically. Currently Dalianis is working in the area of clinical text mining with the aim to improve healthcare in form of better electronic patient record systems, presentation of the patient records and extraction of valuable information both for clinical researchers but also for lay persons as for example patients.

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