Publications

Indexed journals

Alicia Pérez, Aitziber Atutxa, Arantza Casillas, Koldo Gojenola, Álvaro Sellart (2018). Inferred joint multigram models for medical term normalization according to ICD. International Journal of Medical Informatics. Volume 110, February 2018 JCR Q1

Alicia Pérez, Rebecka Weegar, Arantza Casillas, Koldo Gojenola, Maite Oronoz, Hercules Dalianis (2017). Semi-supervised medical entity recognition: A study on Spanish and Swedish clinical corpora Journal of Biomedical Informatics, Volume 71, July 2017, Pages 16-30, ISSN 1532-0464, JCR Q1

Aitziber Atutxa, Alicia Pérez, Arantza Casillas (2017). Machine Learning approaches on Diagnostic Term Encoding with the ICD for Clinical Documentation. IEEE Journal of Biomedical and Health Informatics, issue 99. JCR Q1

Itziar Gonzalez-Dios, María Jesús Aranzabe, Arantza Díaz de Ilarraza (2018).The corpus of Basque simplified texts (CBST). Language Resources and Evaluation 52. pp. 217-247 JCR Q4

Arenas, C., Toma, C., Cormand, B., & Irigoien, I. (2017). Identifying Extreme Observations, Outliers and Noise in Clinical and Genetic Data. Current Bioinformatics, 12(2), 101-117. JCR Q4

Begoña Altuna, María Jesús Aranzabe, Arantza Díaz de Ilarraza (2017). EusHeidelTime: Time Expression Extraction and Normalisation for Basque. Procesamiento del Lenguaje Natural, 59, 15-22 ISSN: 1135-5948, ISSN electrónico: 1989-7553 BEST PAPER AWARD of the 33rd International Conference of the Spanish Society for Natural Language Processing (SEPLN2017) SJR Q3

Arantxa Otegi, Oier Imaz, Arantza Dı́az de Ilarraza, Mikel Iruskieta, Larraitz Uria (2017). ANALHITZA: a tool to extract linguistic information from large corpora in Humanities research. Procesamiento del Lenguaje Natural 58, pp. 77-84. ISSN: 1135-5948. SJR Q3

Itziar Aduriz, María Jesús Aranzabe, José María Arriola, Arantza Díaz de Ilarraza, Itziar Gonzalez-Dios, Ruben Urizar (2017). Building the Gold Standard for the Surface Syntax of Basque . Procesamiento del Lenguaje Natural, 58, 125-132. Consultado en ISSN (edición impresa): 1135-5948, ISSN (edición electrónica): 1989-7553. SJR Q3

Dombayci, C.; Farreres, J.; Rodriguez, H.; Espuña, A.; Graells, M. (2017). Improving automation standards via semantic modelling: Application to ISA88. ISA transactions, vol. 67, pàgs. 443-454 ISSN: 0019-0578 Año: 2017 JCR-Science Edition (2015), Impacto: 2.6, Posición respecto del total de revistas: 6 / 56, Cuartil: Q1

Hermenegildo Fabregat, Lourdes Araujo, Juan Martinez-Romo. Deep neural models for extracting entities and relationships in the new RDD corpus relating disabilities and rare diseases. Computer Methods and Programs in Biomedicine 164: 121-129 (2018). Indicios de calidad: (ISI Web of Science 2017) IP = 2.674, 19 de 103(Q1) (Computer Science, Theory and Practice)

Andres Duque Fernandez, Mark Stevenson, Juan Martinez-Romo, Lourdes Araujo. Co-occurrence graphs for word sense disambiguation in the biomedical domain. Artificial Intelligence in Medicine 87: 9-19 (2018). Indicios de calidad: (ISI Web of Science 2017) IP = 2.879, 31 de 132(Q1) (Computer Science, Artificial Intelligence)

Lourdes Araujo, Juan Martinez-Romo, Andres Duque Fernandez. Discovering taxonomies in Wikipedia by means of grammatical evolution. Soft Comput. 22(9): 2907-2919 (2018). Indicios de calidad: (ISI Web of Science 2017) IP = 2.367, 45 de 132(Q2) (Computer Science, Artificial Intelligence)

Agustín D. Delgado, Raquel Martínez, Soto Montalvo, Víctor Fresno. Person name disambiguation on the Web in a multilingual context. Information Sciences, vol. 465, pp. 373-387, 2018. Indicios de calidad: (ISI Web of Science 2017) IP = 4.038, 12 de 148 (Q1) (Computer Science Information Systems)

M. Almagro, R. Martínez, V. Fresno, S. Montalvo. Estudio preliminar de la anotación automática de códigos CIE-10 en informes de alta hospitalarios. Procesamiento del Lenguaje Natural. Vol. 60. 2017. ISSN: 1135-5948. SJR Q3

Latifi, M.; Rodríguez, H.; Sànchez-Marrè, M. (2017). ScoQAS : a semantic-based closed and open domain question answering system. Procesamiento de lenguaje natural, vol. 59, págs. 73-80, ISSN: 1135-5948, Año: 2017. SJR Q3

Jorge Pérez, Alicia Pérez, Arantza Casillas, Koldo Gojenola (2018). Cardiology record multi-label classification using Latent Dirichlet Allocation. Computer Methods and Programs in Biomedicine. JCR Q1

Sara Santiso, Alicia Pérez, Arantza Casillas (2018). Exploring Joint AB-LSTM with embedded lemmas for Adverse Drug Reaction discovery. IEEE Journal of Biomedical and Health Informatics, 23(5):2148-2155. JCR Q1

Alberto Blanco, Arantza Casillas, Alicia Pérez, Arantza Diaz de Ilarraza (2019). Multi-label clinical document classification: Impact of label-density Expert Systems with Applications, Volume 138, 112835. JCR Q1

J.M. Martínez-Otzeta, I. Irigoien, B. Sierra, C. Arenas (2020). ORdensity: user-friendly R package to identify differentially expressed genes. BMC Bioinformatics, Volumen: 21. Número artículo: 135, doi: 10.1186/s12859-020-3463-4, Fecha: 2020. JCR Q1.

Alberto Blanco, Alicia Pérez, Arantza Casillas, Daniel Cobos (2020). Extracting Cause of Death from Verbal Autopsy with Deep Learning interpretable methods. IEEE Journal of Biomedical and Health Informatics, 10.1109/JBHI.2020.3005769. JCR Q1.

Rebecka Weegar, Alicia Pérez, Arantza Casillas, Maite Oronoz (2019). Recent advances in Swedish and Spanish medical entity recognition in clinical texts using deep neural approaches. BMC Medical Informatics and Decision Making. JCR Q1.

Xabier Soto, Olatz Perez de Viñaspre, Gorka Labaka, Maite Oronoz. Neural Machine Translation of medical texts between long distance languages (2019). JAMIA (Journal of the American Medical Informatics Association. Volume 26, Issue 12. JCR Q1.

Sara Santiso, Alicia Pérez, Arantza Casillas (2019). Smoothing dense spaces for improved relation extraction between drugs and adverse reactions. International Journal of Medical Informatics,Vol. 128, Pages 39-45. JCR Q2

Aitziber Atutxa, Arantza Diaz de Ilarraz, Koldo Gojenola, Maite Oronoz, Olatz Perez de Viñaspre. Interpretable Deep Learning to Map Diagnostic Texts to ICD10 codes. International Journal of Medical Informatics,Vol. 129, Pages 49-59. JCR Q2

Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, Alicia Pérez, Xabier Soto (2019). Measuring the Effect of Different Types of Unsupervised Word Representations on Medical Named Entity Recognition. International Journal of Medical Informatics, Vol 129, Pages 100-106. JCR Q2

Sara Santiso, Alicia Pérez, Arantza Casillas, Maite Oronoz (2020). Neural negated entity recognition in Spanish electronic health records. Journal of Biomedical Informatics (JBI) https://doi.org/10.1016/j.jbi.2020.103419. JCR Q2

Arenas, C., Toma, C., Cormand, B., Irigoien, I. (2017). Identifying Extreme Observations, Outliersand Noise in Clinical and Genetic Data. Current Bioinformatics, 12(2), 101-117. JCR Q4

Itziar Gonzalez-Dios, María Jesús Aranzabe, Arantza Díaz de Ilarraza (2018). The corpus of Basque simplified texts (CBST). Language Resources and Evaluation 52. pp. 217-247. DOI 10.1007/s10579-017-9407-6. JCR Q4

Ceberio, K., Aduriz, I., Díaz de Ilarraza, A. and Garzia-Azkoaga Ines (2018). Coreferential Relations in Basque: The Annotation Process. J Psycholinguist Res (2018) 47, Issue 2. Pages 325-342. ISSN 0090-6905. Online ISSN 1573-6555. JCR Q3

I. Irigoien; C. Arenas. Identification of differentially expressed genes by means of outlier detection. BMC Bioinformatics, Volumen: 19, Número artículo: 317, doi: 10.1186/s12859-018-2318-8, Fecha: 2018. JCR Q1.

Alberto Blanco, Alicia Pérez, Arantza Casillas (2020). Extreme multi-label ICD classification: sensitivity to hospital service and time. IEEE Access, Volume 8, 183534-183545http:/doi.org/10.1109/ACCESS.2020.3029429. JCR Q1.

Alberto Blanco, Olatz Perez de Viñaspre, Alicia Pérez, Arantza Casillas (2020). Boosting ICD multi-label classification of health records with contextual embeddings and label-granularity. Biomedicine, Volume 188, 105264 Computer Methods and Programs in https://doi.org/10.1016/j.cmpb.2019.105264. JCR Q1.

Oscar Rodriguez-Prieto, Lourdes Araujo, Juan Martínez-Romo: Discovering related scientific literature beyond semantic similarity: a new co-citation approach. Scientometrics 120(1): 105-127 (2019). http://nlp.uned.es/~lurdes/araujo/scientometrics19.pdf Indicios de calidad: (ISI Web of Science 2019) IP = 2.867, 45 de 109(Q2) (Computer Science, Multidisciplinary Applications)

Juan R. Martinez-Rico, Juan Martínez-Romo, Lourdes Araujo: Can deep learning techniques improve classification performance of vandalism detection in Wikipedia? Eng. Appl. Artif. Intell. 78: 248-259 (2019) http://nlp.uned.es/~lurdes/araujo/vandalism_wikipedia19.pdf Indicios de calidad: (ISI Web of Science 2019) IP = 4.201, 36 de 136(Q1) (Computer Science, Artificial Intelligence)

Lourdes Araujo: Genetic programming for natural language processing. Genet. Program. Evolvable
Mach. 21(1-2): 11-32 (2020) https://rdcu.be/bLwC8 Indicios de calidad: (ISI Web of Science 2019) IP = 1.781, 41 de 108(Q2) (Computer Science, Theory and Methods)

Hermenegildo Fabregat, Juan Martínez-Romo, Lourdes Araujo: Understanding and Improving Disability Identification in Medical Documents. IEEE Access 8: 155399-155408 (2020). https://ieeexplore.ieee.org/document/9174968 Indicios de calidad: (ISI Web of Science 2019) IP = 3.745, 35 de 156(Q1) (Computer Science, Information Systems)

Agustín D. Delgado, Soto Montalvo, Raquel Martínez-Unanue, Víctor Fresno-Fernández: A Survey of Person Name Disambiguation on the Web. IEEE Access 6: 59496-59514 (2018). https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=8486980 Indicios de calidad: (ISI Web of Science 2018) IP = 4.098, 23 de 155 (Q1) (Computer Science, Information Systems)

Mario Almagro, Raquel Martínez, Soto Montalvo, Víctor Fresno: A cross-lingual approach to automatic ICD-10 coding of death certificates by exploring machine translation. J. Biomed. Informatics 94 (2019). https://www.sciencedirect.com/science/article/pii/S153204641930125X?via%... Indicios de calidad: (ISI Web of Science 2019) IP = 3.526, 32 de 109 (Q2) (Computer Science, Interdisciplinary Applications)

Mario Almagro, Raquel Martínez, Víctor Fresno, Soto Montalvo: ICD-10 Coding of Spanish Electronic Discharge Summaries: An Extreme Classification Problem. IEEE Access 8: 100073-100083 (2020). https://www.sciencedirect.com/science/article/pii/S153204641930125X?via%... Indicios de calidad: (ISI Web of Science 2019) IP = 3.745, 35 de 156 (Q1) (Computer Science, Information Systems)

Mario Almagro-Cádiz, Víctor Fresno, Félix de la Paz: Speech gestural interpretation by applying word representations in robotics. Integr. Comput. Aided Eng. 26(1): 97-109 (2019) https://content.iospress.com/articles/integrated-computer-aided-engineer... Indicios de calidad: (ISI Web of Science 2019) IP = 4.706, 25 de 137 (Q1) (Computer Science, Artificial Intelligence)

Roberto Centeno, Víctor Fresno, Jacobo Chaquet: From textual reviews to Individual Reputation Rankings: Leaving ratings aside solving MPC task. Expert Syst. Appl. 114: 1-14 (2018). https://www.sciencedirect.com/science/article/abs/pii/S0957417418304603?... Indicios de calidad: (ISI Web of Science 2018) IP = 4.292, 24 de 134 (Q1) (Computer Science, Artificial Intelligence)

Other publications

Itziar Aduriz, Iñaki Alegria, Olatz Arregi, Arantza Diaz de Ilarraza, Kepa Sarasola (2017) . Hizkuntza-teknologia “Datu Handien” garaian: programa bilatzaileak, itzultzaileak… Senez, 48 (2017)

Jon Alkorta, Koldo Gojenola, Mikel Iruskieta (2018). Saying no but meaning yes: negation and sentiment analysis in Basque. Proceedings of the 9th Workshop on Computational Approaches to Subjectivity, Sentiment and Social Media Analysis.

Jon Alkorta, Koldo Gojenola, Mikel Iruskieta (2018). SentiTegi: Semi-manually Created Semantic Oriented Basque Lexicon for Sentiment Analysis. Computación y Sistemas, Vol 22, No 4

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Iakes Goenaga, V. Fresno, Koldo Gojenola, R. Martinez, Maite Oronoz, Olatz Perez-de-Viñaspre (2018). IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence approach. CLEF 2018 Online Working Notes. CEUR-WS.

Izaskun Aldezabal, Mª Jesus Aranzabe, Arantza Diaz de Ilarraza, Igone Zabala (2017). Terminologia lantzeko baliabideak EHUn. Senez 48 (2017), 211-216. ISSN: 1132-2152

Maria Jesus Aranzabe, Aitziber Atutxa, Kepa Bengoetxea, Arantza Díaz de Ilarraza, Iakes Goenaga, Koldo Gojenola, Larraitz Uria (2019). Dependentzia Unibertsalen eredura egokitutako euskarazko zuhaitz-bankua. Ekaia. EHUko Zientzia eta Teknologia aldizkaria. http://www.ehu.eus/ojs/index.php/ekaia/article/view/19745/0

Arenas, C., Irigoien, I., Mestres, F., Toma, C., & Cormand, B. (2017). Extreme Observations in Biomedical Data. In Extended Abstracts Fall 2015 (pp. 3-8). Birkhäuser, Cham.

Begoña Altuna, María Jesús Aranzabe&Arantza Díaz de Ilarraza (2018). An Event Factuality Annotation Proposal for Basque. Proceedings of the Second Workshop on Corpus-Based Research in the Humanities (CRH-2)

Jon Alkorta, Koldo Gojenola, Mikel Iruskieta, Maite Taboada (2017). Using lexical level information in discourse structures for Basque sentiment analysis.Proceedings of the 6th Workshop on Recent Advances in RST and Related Formalisms, pages 39–47, Santiago de Compostela, Spain, September 4 2017. Association for Computational Linguistics

Begoña Altuna, María Jesús Aranzabe, Arantza Díaz de Ilarraza (2017). Euskarazko ezeztapenaren tratamendu automatikorako azterketa. Iñaki Alegria, Ainhoa Latatu, Miren Josu Ormaetxebarria eta Patxi Salaberri (arg.), II. IkerGazte, Nazioarteko Ikerketa Euskaraz: Giza Zientziak eta Artea, 127-134, Udako Euskal Unibertsitatea (UEU), Bilbo

Ageno, A.; Casillas, A.; Martínez, R.; Pérez, A.; Rodríguez, H.; Turmo, J. (2017). Preliminary experiments on the use of NegEx with syntax for negation detection in Spanish Electronic Health Records. Taller de NEGación en ESpañol, NEGES-2017: 19 de septiembre de 2017. Sociedad Española para el Procesamiento del Lenguaje Natural (SEPLN). 2017.

Álvarez, P.; Padró, L. (2018). Basic CRF Approach to DIANN 2018 Shared Task. Proceedings of the Evaluation of Human Language Technologies for Iberian Languages. Workshop (IberEval 2018).

Mario Almagro, Soto Montalvo, Arantza Díaz de Ilarraza, Alicia Pérez. MAMTRA-MED at CLEF eHealth 2018: A Combination of Information Retrieval Techniques and Neural Networks for ICD-10 Coding of Death Certificates. Working Notes of CLEF 2018 - Conference and Labs of the Evaluation Forum. CEUR Workshop Proceedings Vol. 2125. Avignon, Francia.

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Victor Fresno, Iakes Goenaga, Koldo Gojenola, Raquel Martínez, Maite Oronoz Anchordoqui, Olatz Perez-De-Viñaspre. IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence Approach. Working Notes of CLEF. 2018 - Conference and Labs of the Evaluation Forum. CEUR Workshop Proceedings Vol. 2125.
Avignon, Francia.

Català, N.; Martí, M. (2019). Coin_flipper at eHealth-KD Challenge 2019: Voting LSTMs for Key Phrases and Semantic Relation Identification Applied to Spanish eHealth Texts. Proceedings of the Iberian Languages Evaluation Forum (IberLEF) co-located with 35th International Conference of the Spanish Society for Natural Language Processing (SEPLN): Bilbao, Spain, 24 September, 2019.

Cotik, V.; Rodríguez, H.; Vivaldi, J. (2018). Spanish Named Entity Recognition in the Biomedical Domain. Proceedings of SIMBig 2018.

Cotik, V.; Rodríguez, H.; Vivaldi, J. (2017). Arabic medical entity tagging using distant learning in a multilingual framework. Journal of King Saud University-Computer and Information Sciences, vol. 29, núm. 2, págs. 204-211,ISSN: 1319-1578 Año: 2017

A. Díaz de Ilarraza, K. Gojenola, R. Martínez, V. Fresno, J. Turmo, L. Padró. PROcesamiento Semántico textual Avanzado para la detección de diagnósticos, procedimientos, otros conceptos y sus relaciones en informes MEDicos (PROSA-MED). Procesamiento del Lenguaje Natural. Vol. 59, pp. 133-136. 2017. ISSN: 1135-5948.

El Adlouni, Y.; Lahbari, I.; Rodríguez, H.; Meknassi, M.; El Alaoui, S.O.; Ennahnahi, N. UPC-USMBA at SemEval-2017 Task 3: Combining multiple approaches for CQA for Arabic. 11th International Workshop on Semantic Evaluations (SemEval-2017): proceedings of the workshop: August 3-4, 2017, Vancouver, Canada. Association for Computational Linguistics. 2017.

Andrés Duque Fernandez, Lourdes Araujo, Juan Martinez-Romo. LSI UNED at M-WePNaD: Embeddings for Person Name Disambiguation. IberEval@SEPLN 2017: 138-146. Murcia (España).

Hermenegildo Fabregat, Juan Martinez-Romo, Lourdes Araujo. Overview of the DIANN Task: Disability Annotation Task. IberEval@SEPLN 2018: 1-14.

Hermenegildo Fabregat, Juan Martinez-Romo, Lourdes Araujo. UNED at DIANN 2018: Unsupervised System for Automatic Disabilities Labeling in Medical Scientific Documents. IberEval@SEPLN 2018: 53-60. Sevilla, España.

Hermenegildo Fabregat, Juan Martinez-Romo, Lourdes Araujo. Aplicación basada en Deep Learning para identificación de claves de negación en castellano. Neges 2018: Workshop on negation in Spanish (SEPLN 2018). Sevilla, España.

Iakes Goenaga, Aitziber Atutxa, Koldo Gojenola, Arantza Casillas, Arantza Díaz de Ilarraza, Nerea Ezeiza, Maite Oronoz, Alicia Pérez, Olatz Perez de Viñaspre (2018). Automatic Misogyny Identification Using Neural Networks. Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018). ISSN 1613-073. Vol-2150. Pages 249-254.

Iakes Goenaga, Aitziber Atutxa, Koldo Gojenola, Arantza Casillas, Arantza Díaz de Ilarraza, Nerea Ezeiza, Maite Oronoz, Alicia Pérez, Olatz Perez de Viñaspre (2018). A Hybrid Approach For Automatic Disability Annotation. Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018). ISSN 1613-073. Vol-2150. Pages 31-36.

Itziar Gonzalez-Dios, María Jesús Aranzabe, Arantza Díaz de Ilarraza (2017). Euskarazko testu idatzien konplexutasunaren azterketa eta sinplifikazio automatikorako proposamena. EKAIA. Hurrengo argitalpenak. DOI: 10.1387/ekaia.17907

Jiménez, A., Boto, F., Irigoien, I., Sierra, B., & Suarez, A. (2017). Stability analysis of radial turning process for Superalloys. Management Systems in Production Engineering, 25(3), 158-162.

Uxoa Iñurrieta, Itziar Aduriz, Arantza Díaz de Ilarraza, Gorka Labaka, Kepa Sarasola (2017). Rule-based translation of Spanish verb-noun combinations into Basque. Proceedings of the 13th Workshop on Multiword Expressions MWE 2017 (EACL2017), pages 149–154,Valencia, Spain, April 4. ©2017 Association for Computational Linguistics

Uxoa Iñurrieta, Itziar Aduriz, Arantza Díaz de Ilarraza, Gorka Labaka, Kepa Sarasola (2017) Aditza+izena konbinazioen itzulpen automatikoa, arau linguistikoen bidez. IkerGazte: nazioarteko ikerketa euskaraz. Kongresuko artikulu-bilduma. Giza zientziak eta artea.

Lahbari, I.; Rodríguez, H.; El Alaoui, S.O. (2018). Not all the questions are (equally) difficult. An hybrid approach to CQA in Arabic. Procesamiento del Lenguaje Natural. N. 60 (2018).

Loharja, H.; Padró, L.; Turmo, J. (2018). Negation Cues Detection Using CRF on Spanish Product Review Texts. a presentar en Taller de NEGación en ESpañol, NEGES-2018: 19 de septiembre de 2018, Sevilla. Sociedad Española para el Procesamiento del Lenguaje Natural (SEPLN).

Marimon, M.; Padró, L.; Turmo, J. (2018). Coreference Resolution in FreeLing 4.0. Proceedings of the Eleventh International Conference on Language Resources and Evaluation. (LREC 2018), May 7-12, 2018, Miyazaki, Japan. European Language Resources Association (ELRA)

Medina, S.; Turmo, J.; Loharja, H.;Padró, L . (2018). Semi-supervised Learning for Disabilities Detection on English and Spanish Biomedical Text. Proceedings of the Evaluation of Human Language Technologies for Iberian Languages. Workshop (IberEval 2018)

Medina, S; Turmo J . (2018). Building a Spanish/Catalan Health Records Corpus with Very Sparse Protected Information Labelled. Proceedings of the Eleventh International Conference on Language Resources and Evaluation (LREC 2018), May 7-12, 2018, Miyazaki, Japan. European Language Resources Association (ELRA).

Medina, S. (2017) Bootstrapping for electronic health record anonymization with minimal supervision. Master Thesis in Artificial Intelligence. Universitat Politècnica de Catalunya. January, 2017.

Medina, S.; Turmo, J. (2018). Joint classification of Key-Phrases and Relations in Electronic Health Documents. Proceedings of TASS workshop of SELPN. 2018. Sevilla España.

Medina, S.; Turmo, J.; Loharja, H.; Padró, L .(2018). Semi-supervised Learning for Disabilities Detection on English and Spanish Biomedical Text. Proceedings of the 3rd Evaluation of Human Language Technologies for Iberian Languages Workshop (IberEval): Sevilla, Spain, September 18, 2018

Medina, S.; Turmo, J. (2020). TALP at eHealth-KD Challenge 2020: Multi-Level Recurrent and Convolutional Neural Networks for Joint Classification of Key-Phrases and Relations. Proceedings of the Iberian Languages Evaluation Forum (IberLEF) co-located with 36th International Conference of the Spanish Society for Natural Language Processing (SEPLN): online, 22 September, 2020.

Merino, M. (2020). Machine Learning per a la detecció d'entitats mèdiques en informes clínics. Trabajo Final de Grado. Universitat Politècnica de Catalunya, Barcelona, Spain. April, 2020.

Olivares, A.; Stankovic, I.; González, H.; Rodríguez, H. (2018). Measuring distances between medical entities. Step 1: DrugBank. Proceedings of the 21st International Conference of the Catalan Association for Artificial Intelligence (CCIA): Roses, Spain, October 8-10, 2018.

Quintero, N. (2019). Extracting patterns from medical records using temporal data mining techniques. Master Thesis. Universitat Politècnica de Catalunya. Barcelona, Spain. October, 2019

Soto Montalvo, Raquel Martínez, Mario Almagro, Susana Lorenzo. MAMTRA-MED at Biomedical Abbreviation Recognition and Resolution. Proceedings of the 3rd Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018), pp. 290-296. Sevilla, España.

Montalvo, S.; Oronoz, M.; Rodriguez, H.; Martínez, R. (2017). Biomedical abbreviation recognition and resolution by PROSA-MED. Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017): Murcia, Spain, September 19, 2017. CEUR-WS.org.

S. Montalvo, R. Martínez, V. Fresno, A.D. Delgado, A. Zubiaga, R. Berendsen. Overview of the M-WePNaD task: Multilingual web person name disambiguation at IberEval 2017. Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017). CEUR Workshop Proceedings Vol. 1881, pp. 113-127. Murcia (España).

S. Montalvo, M. Oronoz, H. Rodríguez, R. Martínez. Biomedical abbreviation recognition and resolution by PROSAMED. Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017). CEUR Workshop Proceedings, 1881, pp. 247--254. Murcia (España).

Olivares, A.; Stankovic, I.; González, H.; Rodríguez, H. (2018). Measuring distances between medical entities. Step 1: DrugBank. Proceedings of the Conference of the Catalan Association for Artificial Intelligence 2018. Girona, España.

Haritz Salaberri, Olatz Arregi, Beñat Zapirain (2017). Euskarazko gertaeren etiketatze automatikoa. IkerGazte-2017, Iruñea (Nafarroa)

Sànchez-Ferreres, J.; Carmona, J.; Padró, L. (2017). Aligning Textual and Graphical Descriptions of Processes Through ILP Techniques. CAISE 2017: Advanced Information Systems Engineering, 413--427
Springer International Publishing.

S. Santiso, A. Casillas, A. Pérez, M. Oronoz (2017). Medical Entity Recognition and Negation Extraction: Assessment of NegEx on Health Records in Spanish. Bioinformatics and Biomedical Engineering. 5th International Work-Conference, IWBBIO 2017, Granada, Spain, April 26–28, 2017, Proceedings, Part I. DOI: 10.1007/978-3-319-56148-6 . Part of the Lecture Notes in Computer Science book series (LNCS, volume 10208).

A. Soraluze, O. Arregi, X. Arregi,A. Diaz de Ilarraza (2017). Enriching Basque Coreference Resolution System using Semantic Knowledge sources. Proceedings of the 2nd Workshop on Coreference Resolution Beyond OntoNotes (CORBON 2017), co-located with EACL 2017, pp. 8-16, Valencia, Spain.

Vivaldi, J.; Rodríguez, H. (2017). Arabic medical terms compilation from Wikipedia. 3rd International IEEE Colloquium on Information Science and Technology Tetuan-Chefchaouen, Morocco. Institute of Electrical and Electronics Engineers (IEEE).

Vivaldi, J.; Rodríguez, H. (2018). TASS2018: Medical knowledge discovery by combining terminology extraction techniques with machine learning classification. Proceedings of TASS workshop of SEPLN. 2018.
Sevilla España

Rebecka Weegar, Alicia Pérez, Hercules Dalianis, Koldo Gojenola, Arantza Casillas, Maite Oronoz (2018). Ensembles for clinical entity extraction. Procesamiento del Lenguaje Natural, Vol 60, p. 13-20, mar. 2018. ISSN 1989-7553. DOI 10.26342/2018-60-1

Mario Almagro, Raquel Martínez-Unanue, Víctor Fresno, Soto Montalvo, Hegler Tissot: ICD-10 Coding based on Semantic Distance: LSI_UNED at CLEF eHealth 2020 Task 1. CLEF (Working Notes) 2020. http://ceur-ws.org/Vol-2696/paper_196.pdf (Colaboración internacional)

Hermenegildo Fabregat, Lourdes Araujo, Juan Martínez-Romo: Deep learning approach for negation trigger and scope recognition. Proces. del Leng. Natural 62: 37-44 (2019). http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/5950

Hermenegildo Fabregat, Juan Martinez-Romo, Lourdes Araujo. Overview of the DIANN Task: Disability Annotation Task. IberEval@SEPLN 2018: 1-14 http://ceur-ws.org/Vol-2150/overview-diann-task.pdf

Lourdes Araujo, Juan Martínez-Romo, Andrés Duque, Fernando López-Ostenero, Ricardo Sánchez-de-Madariaga, Adolfo Muñoz Carrero, Mario Pascual Carrasco: EXTRAE: EXTRacción de Asociaciones entre Enfermedades y otros conceptos médicos. Proces. del Leng. Natural 63: 171-174 (2019). https://rua.ua.es/dspace/bitstream/10045/96624/1/PLN_63_23.pdf

Andrés Duque Fernandez, Lourdes Araujo, Juan Martinez-Romo. LSI UNED at M-WePNaD: Embeddings for Person Name Disambiguation. IberEval@SEPLN 2017: 138-146 http://ceur-ws.org/Vol-1881/MWePNaD2017_paper_2.pdf

Aitziber Atutxa, Arantza Casillas, Nerea Ezeiza, Víctor Fresno, Iakes Goenaga, Koldo Gojenola, Raquel Martínez, Maite Oronoz Anchordoqui, Olatz Perez-de-Viñaspre: IxaMed at CLEF eHealth 2018 Task 1: ICD10 Coding with a Sequence-to-Sequence Approach. CLEF (Working Notes) 2018. http://ceur-ws.org/Vol-2125/paper_167.pdf
(Colaboración de subproyectos de la IXA-UPV y UNED)

Soto Montalvo, Mario Almagro, Raquel Martínez, Víctor Fresno, Susana Lorenzo, Maria Carmen Morales, Beatriz Gonzalez, Jacinto Alamo, Alejandro Garcia-Caro: Graphical User Interface for assistance with ICD-10 coding of Hospital Discharge Records. BIBM 2018: 2786-2788 https://www.computer.org/csdl/proceedings-article/bibm/2018/08621420/17D...

Soto Montalvo, Raquel Martínez, Mario Almagro, Susana Lorenzo: MAMTRA-MED at Biomedical Abbreviation Recognition and Resolution - IberEval 2018. IberEval@SEPLN 2018: 290-296 http://ceur-ws.org/Vol-2150/BARR2_paper1.pdf

S. Montalvo, M. Oronoz, H. Rodríguez, R. Martínez. Biomedical abbreviation recognition and resolution by PROSA-MED. Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017). CEUR Workshop Proceedings, 1881, pp. 247--254. Murcia (España). http://ceur-ws.org/Vol-1881/BARR2017_paper_1.pdf (Colaboración de los 3 subproyectos)

Miguel Ángel García Cumbreras, Julio Gonzalo, Eugenio Martínez Cámara, Raquel Martínez-Unanue, Paolo Rosso, Jorge Carrillo-de-Albornoz, Soto Montalvo, Luis Chiruzzo, Sandra Collovini, Yoan Gutiérrez, Salud M. Jiménez Zafra, Martin Krallinger, Manuel Montes-y-Gómez, Reynier Ortega-Bueno, Aiala Rosá: Proceedings of the Iberian Languages Evaluation Forum co-located with 35th Conference of the Spanish Society for Natural Language Processing, IberLEF@SEPLN 2019, Bilbao, Spain, September 24th, 2019. CEUR Workshop Proceedings 2421, CEUR-WS.org 2019 http://ceur-ws.org/Vol-2421/ (Colaboración internacional)

Paolo Rosso, Julio Gonzalo, Raquel Martínez, Soto Montalvo, Jorge Carrillo de Albornoz: Proceedings of the Third Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2018) co-located with 34th Conference of the Spanish Society for Natural Language Processing (SEPLN 2018), Sevilla, Spain, September 18th, 2018. CEUR Workshop Proceedings 2150, CEUR-WS.org 2018. http://ceur-ws.org/Vol-2150/
(Colaboración internacional)

Raquel Martínez, Julio Gonzalo, Paolo Rosso, Soto Montalvo, Jorge Carrillo de Albornoz. Proceedings of the Second Workshop on Evaluation of Human Language Technologies for Iberian Languages (IberEval 2017) co-located with 33th Conference of the Spanish Society for Natural Language Processing (SEPLN 2017), Murcia, Spain, September 19, 2017. CEUR Workshop Proceedings 1881, CEUR-WS.org 2017. http://ceur-ws.org/Vol-1881/
(Colaboración internacional)

Razan Masood, Mengjiao Hu, Hermenegildo Fabregat, Ahmet Aker, Norbert Fuhr: Anorexia Topical Trends in Self-declared Reddit Users. CIRCLE 2020. http://ceur-ws.org/Vol-2621/CIRCLE20_14.pdf (Colaboración Internacional)

Book chapters

Antton Gurrutxaga, Iñaki Alegria, Xabier Artola (2018). Caracterización computacional de la idiomaticidad: aplicación a la combinación nombre+verbo en euskera. Estudios de Lexicología y Lexicografía. Homenaje a Eloína Miyares Bermúdez (book chapter)

Phd Theses

Author: Iakes Goenaga Azkarate
Supervisor: Nerea Ezeiza, Koldo Gojenola
Title: ASKHi: Analisi sintaktiko konputazional hibridoa paradigma desberdinen konbinazioan oinarrituta
Institution: Universidad del País Vasco UPV/EHU
Date: 2017

Author: Ander Soraluze
Supervisor: Olatz Arregi Uriarte, Xabier Arregi Iparragirre
Title: Korreferentzia-ebazpena euskarazko testuetan
Institution: Universidad del País Vasco UPV/EHU
Date: 2017

Author: Zuhaitz Beloki
Supervisor: Xabier Artola, Aitor Soroa
Title: Integrazioa hizkuntzaren prozesamenduan. Anotazio-eskemak eta elkarreragingarritasuna. Testuen prozesatze masiboa, datu handien teknikak erabiliz
Institution: Universidad del País Vasco UPV/EHU
Date: 2017

Author: Begoña Altuna
Supervisor: Maxux Aranzabe, Arantza Díaz de Ilarraza
Title: Euskarazko denbora-egituren azterketa eta corpusaren sorrera / Analysis of Basque temporal constructions and the creation of a corpus
Institution: Universidad del País Vasco UPV/EHU
Date: 2018

Author: Sara Santiso
Supervisor: Arantza Casillas, Alicia Pérez
Title: Detección de efectos adversos a medicamentos en textos clínicos en castellano
Institution: Universidad del País Vasco UPV/EHU
Date: 2019

Author: Jon Alkorta
Supervisor: Mikel Iruskieta, Koldo Gojenola
Title: Influencia de la estructura discursiva en análisis de opiniones / Diskurtso-egituren eragina iritzi-testuetan
Institution: Universidad del País Vasco UPV/EHU, International Thesis
Date: 2019

Author: Andrés Duque Fernández
Supervisor: Lourdes Araujo Serna y Juan Martínez Romo
Title: Word Sense Disambiguation in Multilingual Contexts
Institution: Nacional de Educación a Distancia (UNED)
Date: 17-02-2017

Author: Agustín Delgado Leal
Supervisor: Raquel Martínez Unanue y Ma. Soto Montalvo Harranz.
Title: Desambiguación de nombres de personas en la Web en un contexto multilingüe
Institution: Nacional de Educación a Distancia (UNED)
Date: 13-09-2017

Author: Haritz Salaberri Izco
Supervisor: Olatz Arregi y Beñat Zapirain
Title: Rol semantikoen etiketatzeak testuetako espazio-denbora informazioaren prozesamenduan
daukan eraginaz
Institution: Universidad del País Vasco UPV/EHU
Date: 2017

Author: Olatz Perez de Viñaspre
Supervisor: Jon Patrick y Maite Oronoz
Title: Osasun-alorreko termino-sorkuntza automatikoa: SNOMED CTren eduki terminologikoaren
euskaratzea
Institution: Universidad del País Vasco UPV/EHU
Date: 2017

Author: Uxoa Iñurrieta Urmeneta
Supervisor: María Itziar Aduriz, Gorka Labaka
Title: Aditza+izena Unitate Fraseologikoak gaztelaniatik euskarara: azterketa eta tratamendu
konputazionala // Verb+Noun Multiword Expressions: A linguistic analysis for identification and translation
Institution: Universidad del País Vasco UPV/EHU, International Thesis
Date: 2019

Author: Begoña Altuna
Supervisor: Maria Jesus Aranzabe y Arantza Diaz de Ilarraza
Title: Análisis de estructuras temporales en euskera y creación de un corpus
Institution: Universidad del País Vasco UPV/EHU
Date: 2020